In my commander setup page, I have Cheetah which has: 
Morph 1:
Metal: 250 
Slot 1 (Weapon):  Flamethrower  Submit 
Slot 2 (Module):  High Power Servos  Submit 
Morph 2:
Metal: 450 
Slot 3 (Module):  Ablative Armor Plates  Submit 
Slot 4 (Module):  High Power Servos  Submit 
Morph 3:
Metal: 1425 
Slot 5 (Man. Wep):  Disruptor Bomb  Submit 
Slot 6 (Module):  High Density Plating  Submit 
Slot 7 (Module):  Personal Cloak  Submit 
Morph 4:
Metal: 1000 
Slot 8 (Module):  High Power Servos  Submit 
Slot 9 (Module):  High Density Plating  Submit 
Slot 10 (Module):  Autorepair System  Submit 
Morph 5:
Metal: 1100 
Slot 11 (Module):  High Power Servos  Submit 
Slot 12 (Module):  High Density Plating  Submit 
Slot 13 (Module):  Autorepair System  Submit 
Decorations:
Slot 1  Recon Skin - Red  Submit 
In game, whenever I morph beyond the 2nd morph, the modules in the 3rd and subsequent morphs are not being pulled from the commander page and I have to manually add modules in the in-game module upgrade facility. 
Why is this happening?